Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | W A apply_istft() (in module deepextractor.utils.stft) apply_stft() (in module deepextractor.utils.stft) apply_stft_and_save() (in module deepextractor.generation.generate_spectrograms) attn (deepextractor.models.architectures.MHSA1D attribute) Autoencoder1D (class in deepextractor.models.architectures) Autoencoder2D (class in deepextractor.models.architectures) B background() (deepextractor.model.DeepExtractorModel method) background_key (deepextractor.data.datasets.HDF5Dataset attribute) bottleneck (deepextractor.models.architectures.Autoencoder1D attribute) (deepextractor.models.architectures.Autoencoder2D attribute) (deepextractor.models.architectures.ModifiedAutoencoder2D attribute) (deepextractor.models.architectures.UNET1D attribute) (deepextractor.models.architectures.UNET2D attribute) bottleneck_conv (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) butter_filter() (in module deepextractor.utils.signal) butter_highpass() (in module deepextractor.utils.signal) butter_lowpass() (in module deepextractor.utils.signal) C calculate_mae() (in module deepextractor.utils.metrics) calculate_mape() (in module deepextractor.utils.metrics) calculate_match() (in module deepextractor.evaluation.simulate) calculate_mse() (in module deepextractor.utils.metrics) calculate_psnr() (in module deepextractor.utils.metrics) calculate_r2() (in module deepextractor.utils.metrics) calculate_rmse() (in module deepextractor.utils.metrics) calculate_snr() (in module deepextractor.utils.metrics) ChannelStandardScaler (class in deepextractor.data.preprocessing) check_accuracy() (in module deepextractor.utils.io) CHECKPOINT_BILBY (in module deepextractor.utils.checkpoints) CHECKPOINT_REAL (in module deepextractor.utils.checkpoints) conv (deepextractor.models.architectures.DoubleConv1D attribute) (deepextractor.models.architectures.DoubleConv2D attribute) custom_whiten() (in module deepextractor.utils.signal) D deepextractor module deepextractor.api module deepextractor.data module deepextractor.data.datasets module deepextractor.data.omicron module deepextractor.data.preprocessing module deepextractor.evaluation module deepextractor.evaluation.simulate module deepextractor.generation module deepextractor.generation.generate_spectrograms module deepextractor.generation.generate_timeseries module deepextractor.generation.glitch_functions module deepextractor.model module deepextractor.models module deepextractor.models.architectures module deepextractor.training module deepextractor.training.train_fn module deepextractor.training.trainer module deepextractor.utils module deepextractor.utils.checkpoints module deepextractor.utils.io module deepextractor.utils.metrics module deepextractor.utils.signal module deepextractor.utils.stft module deepextractor.utils.visualization module DeepExtractorModel (class in deepextractor.model) DeepExtractorSeparator (class in deepextractor.model) DEFAULT_HOP_LENGTH (in module deepextractor.generation.generate_spectrograms) DEFAULT_N_FFT (in module deepextractor.generation.generate_spectrograms) DEFAULT_WIN_LENGTH (in module deepextractor.generation.generate_spectrograms) device (deepextractor.model.DeepExtractorModel attribute) (deepextractor.model.DeepExtractorSeparator attribute) dncnn (deepextractor.models.architectures.DnCNN1D attribute) DnCNN1D (class in deepextractor.models.architectures) DoubleConv1D (class in deepextractor.models.architectures) DoubleConv2D (class in deepextractor.models.architectures) downs (deepextractor.models.architectures.Autoencoder1D attribute) (deepextractor.models.architectures.Autoencoder2D attribute) (deepextractor.models.architectures.ModifiedAutoencoder2D attribute) (deepextractor.models.architectures.UNET1D attribute) (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) (deepextractor.models.architectures.UNET2D attribute) E eval_fn_td() (in module deepextractor.training.train_fn) evaluate_model() (in module deepextractor.evaluation.simulate) extract (in module deepextractor.api) F fetch_omicron_triggers() (in module deepextractor.data.omicron) final_conv (deepextractor.models.architectures.Autoencoder1D attribute) (deepextractor.models.architectures.Autoencoder2D attribute) (deepextractor.models.architectures.ModifiedAutoencoder2D attribute) (deepextractor.models.architectures.UNET1D attribute) (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) (deepextractor.models.architectures.UNET2D attribute) find_clean_gaps() (in module deepextractor.data.omicron) fit() (deepextractor.data.preprocessing.ChannelStandardScaler method) fit_from_hdf5() (deepextractor.data.preprocessing.ChannelStandardScaler method) fit_transform() (deepextractor.data.preprocessing.ChannelStandardScaler method) forward() (deepextractor.models.architectures.Autoencoder1D method) (deepextractor.models.architectures.Autoencoder2D method) (deepextractor.models.architectures.DnCNN1D method) (deepextractor.models.architectures.DoubleConv1D method) (deepextractor.models.architectures.DoubleConv2D method) (deepextractor.models.architectures.LSTMBottleneck1D method) (deepextractor.models.architectures.MHSA1D method) (deepextractor.models.architectures.ModifiedAutoencoder2D method) (deepextractor.models.architectures.SE1D method) (deepextractor.models.architectures.UNET1D method) (deepextractor.models.architectures.UNET1D_LSTM_ATT method) (deepextractor.models.architectures.UNET2D method) G generate_cdvgan_glitch() (in module deepextractor.generation.glitch_functions) generate_chirp() (in module deepextractor.generation.glitch_functions) generate_gaussian_noise() (in module deepextractor.generation.generate_timeseries) (in module deepextractor.utils.signal) generate_gaussian_pulse() (in module deepextractor.generation.glitch_functions) generate_gengli_glitch() (in module deepextractor.generation.glitch_functions) generate_glitch_data() (in module deepextractor.evaluation.simulate) generate_hybrid_glitch_data() (in module deepextractor.evaluation.simulate) generate_sine() (in module deepextractor.generation.glitch_functions) generate_sine_gaussian() (in module deepextractor.generation.glitch_functions) generate_synthetic_data() (in module deepextractor.generation.generate_timeseries) get_loaders() (in module deepextractor.utils.io) gwf_to_lcf() (in module deepextractor.utils.io) H h1_background (deepextractor.model.SeparationResult attribute) h1_signal (deepextractor.model.SeparationResult attribute) hdf5_path (deepextractor.data.datasets.HDF5Dataset attribute) HDF5Dataset (class in deepextractor.data.datasets) HF_REPO_ID (in module deepextractor.utils.checkpoints) hop_length (deepextractor.model.DeepExtractorModel attribute) I input_channels_needed (deepextractor.data.datasets.SpectrogramDataset attribute) input_key (deepextractor.data.datasets.HDF5Dataset attribute) input_path (deepextractor.data.datasets.SpectrogramDataset attribute) input_scaler (deepextractor.data.datasets.HDF5Dataset attribute) input_shape (deepextractor.data.datasets.SpectrogramDataset attribute) inputs (deepextractor.data.datasets.TimeSeriesDataset attribute) inverse_transform() (deepextractor.data.preprocessing.ChannelStandardScaler method) L l1_background (deepextractor.model.SeparationResult attribute) l1_signal (deepextractor.model.SeparationResult attribute) LENGTH (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.generate_timeseries) load_and_concatenate_chunks() (in module deepextractor.generation.generate_spectrograms) load_checkpoint() (in module deepextractor.utils.checkpoints) load_optimizer() (in module deepextractor.utils.checkpoints) load_tf_model() (in module deepextractor.utils.io) load_torch_model() (in module deepextractor.utils.checkpoints) logger (in module deepextractor.data.omicron) (in module deepextractor.evaluation.simulate) (in module deepextractor.model) (in module deepextractor.models.architectures) (in module deepextractor.training.trainer) (in module deepextractor.utils.checkpoints) (in module deepextractor.utils.io) lstm (deepextractor.models.architectures.LSTMBottleneck1D attribute) LSTMBottleneck1D (class in deepextractor.models.architectures) M main() (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.generate_spectrograms) (in module deepextractor.generation.generate_timeseries) (in module deepextractor.training.trainer) mean_ (deepextractor.data.preprocessing.ChannelStandardScaler attribute) MHSA1D (class in deepextractor.models.architectures) MINIMUM_FREQUENCY (in module deepextractor.generation.generate_timeseries) MODEL_REGISTRY (in module deepextractor.evaluation.simulate) (in module deepextractor.training.trainer) ModifiedAutoencoder2D (class in deepextractor.models.architectures) module deepextractor deepextractor.api deepextractor.data deepextractor.data.datasets deepextractor.data.omicron deepextractor.data.preprocessing deepextractor.evaluation deepextractor.evaluation.simulate deepextractor.generation deepextractor.generation.generate_spectrograms deepextractor.generation.generate_timeseries deepextractor.generation.glitch_functions deepextractor.model deepextractor.models deepextractor.models.architectures deepextractor.training deepextractor.training.train_fn deepextractor.training.trainer deepextractor.utils deepextractor.utils.checkpoints deepextractor.utils.io deepextractor.utils.metrics deepextractor.utils.signal deepextractor.utils.stft deepextractor.utils.visualization N n_channels_ (deepextractor.data.preprocessing.ChannelStandardScaler attribute) n_fft (deepextractor.model.DeepExtractorModel attribute) net (deepextractor.models.architectures.SE1D attribute) norm (deepextractor.models.architectures.LSTMBottleneck1D attribute) (deepextractor.models.architectures.MHSA1D attribute) numpy_to_gwf() (in module deepextractor.utils.io) NYQUIST_FREQ (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.glitch_functions) O O1_END (in module deepextractor.data.omicron) O1_START (in module deepextractor.data.omicron) O2_END (in module deepextractor.data.omicron) O2_START (in module deepextractor.data.omicron) O3A_END (in module deepextractor.data.omicron) O3A_START (in module deepextractor.data.omicron) O3B_END (in module deepextractor.data.omicron) O3B_START (in module deepextractor.data.omicron) O4A_END (in module deepextractor.data.omicron) O4A_START (in module deepextractor.data.omicron) O4B_END (in module deepextractor.data.omicron) O4B_START (in module deepextractor.data.omicron) P plot_examples() (in module deepextractor.utils.visualization) plot_q_transform() (in module deepextractor.utils.visualization) pool (deepextractor.models.architectures.Autoencoder1D attribute) (deepextractor.models.architectures.Autoencoder2D attribute) (deepextractor.models.architectures.ModifiedAutoencoder2D attribute) (deepextractor.models.architectures.UNET1D attribute) (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) (deepextractor.models.architectures.UNET2D attribute) prepare_data_for_stft() (in module deepextractor.evaluation.simulate) proj (deepextractor.models.architectures.LSTMBottleneck1D attribute) proj_in (deepextractor.models.architectures.MHSA1D attribute) proj_out (deepextractor.models.architectures.MHSA1D attribute) Q quality_factor_conversion() (in module deepextractor.utils.signal) R reconstruct() (deepextractor.model.DeepExtractorModel method) (in module deepextractor.api) rescale() (in module deepextractor.utils.signal) ringdown() (in module deepextractor.generation.glitch_functions) RUN_PERIODS (in module deepextractor.data.omicron) S SAMPLE_RATE (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.generate_timeseries) save_checkpoint() (in module deepextractor.utils.checkpoints) save_omicron_triggers() (in module deepextractor.data.omicron) save_predictions_as_plots() (in module deepextractor.utils.visualization) scale_ (deepextractor.data.preprocessing.ChannelStandardScaler attribute) SE1D (class in deepextractor.models.architectures) separate() (deepextractor.model.DeepExtractorSeparator method) (in module deepextractor.api) SeparationResult (class in deepextractor.model) SIGNAL_FUNCTION_MAP (in module deepextractor.generation.generate_timeseries) signal_key (deepextractor.data.datasets.HDF5Dataset attribute) SIGNAL_TYPES (in module deepextractor.generation.generate_timeseries) skip_se (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) SNR_SCALING_FACTOR_BILBY (in module deepextractor.generation.generate_timeseries) SpectrogramDataset (class in deepextractor.data.datasets) SRATE (in module deepextractor.generation.glitch_functions) T T (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.generate_timeseries) T_INJ (in module deepextractor.evaluation.simulate) (in module deepextractor.generation.generate_timeseries) target_channels_needed (deepextractor.data.datasets.SpectrogramDataset attribute) target_path (deepextractor.data.datasets.SpectrogramDataset attribute) target_shape (deepextractor.data.datasets.SpectrogramDataset attribute) target_signal_only (deepextractor.data.datasets.HDF5Dataset attribute) targets (deepextractor.data.datasets.TimeSeriesDataset attribute) TimeSeriesDataset (class in deepextractor.data.datasets) train_fn() (in module deepextractor.training.train_fn) train_fn_td() (in module deepextractor.training.train_fn) transform (deepextractor.data.datasets.HDF5Dataset attribute) (deepextractor.data.datasets.SpectrogramDataset attribute) (deepextractor.data.datasets.TimeSeriesDataset attribute) transform() (deepextractor.data.preprocessing.ChannelStandardScaler method) U UNET1D (class in deepextractor.models.architectures) UNET1D_LSTM_ATT (class in deepextractor.models.architectures) UNET2D (class in deepextractor.models.architectures) ups (deepextractor.models.architectures.Autoencoder1D attribute) (deepextractor.models.architectures.Autoencoder2D attribute) (deepextractor.models.architectures.ModifiedAutoencoder2D attribute) (deepextractor.models.architectures.UNET1D attribute) (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) (deepextractor.models.architectures.UNET2D attribute) use_lstm (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) use_mhsa_bottleneck (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) use_mhsa_decoder (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) use_mhsa_encoder (deepextractor.models.architectures.UNET1D_LSTM_ATT attribute) W whitened_snr_scaling() (in module deepextractor.utils.signal) win_length (deepextractor.model.DeepExtractorModel attribute)